Study SRP023455 Download

TitleGSE47330: JMJD2A-KDM4A_Q2541.OR Head Nuclei.Solexa
AbstractSummary: modENCODE_submission_5594 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of 125 chromosomal proteins across the Drosophila melanogaster genome. The proteins under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using the Illumina NGS platform. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: Mixed Adult; Genotype: wild type; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); tissue (organism part) ; Antibody JMJD2A-KDM4A Q2541 (target is JMJD2A/KDM4A); Developmental Stage Mixed Adult
Referencesno content
OrganismsDrosophila melanogaster
TypeEpigenetics
Descriptionno content
SubmitterGene Expression Omnibus
Related objects
SubmissionsSRA082555
LinksGEO Series, Unknown DB(gds), Unknown DB(bioproject)
Project Contact Name = DCC, modENCODE; Email = help@modencode.org; Laboratory = modENCODE DCC; Institute = Ontario Institute for Cancer Research; Address = MaRS Centre, South Tower, 101 College Street, Suite 800; City = Toronto; Zip/Postal Code = M5G 0A3; Country = Canada; Phone = 416-673-8579; Web Link = www.modencode.org
Project Contributor Gary, Karpen, Sarah, Elgin, Andrey, Gortchakov, Greg, Shanower, Michael, Tolstorukov, Peter, Kharchenko, Mitzi, Kuroda, Vincenzo, Pirrotta, Peter, Park, Aki, Minoda, Nicole, Riddle, Yuri, Schwartz, Art, Alekseyenko, Cameron, Kennedy